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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtttacatatatcactatctaatcatttttgtcattttgtttcctatttctcatctaaatgtttgatgttttgattgtaacag

Basic information

species Arabidopsis thaliana
transcript AT2G34880.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34880.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtttacatatatcactatctaa--tcatttttgtcattttgtttcctatttctcatctaaatgt----ttgatgttttgattgtaacag-------
||| ||||  || ||| |||||   | ||| |   |||| || ||||| ||||  ||||||||||| ||||| |||||||| |||||| | ||||| |||||||||    | | ||   |||| ||    |  ||| | |||  |     | ||      | | |||     ||  | ||   ||| |            
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat

upper sequence: AT2G34880.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtttacatatatcactatctaa--tcatttttgtcattttgt-------ttcctatttctcatctaaatgtttgatgttttgattgtaacag----
||| ||||  || ||| |||||   | ||| |   |||| || ||||| ||||  ||||||||||| ||||| |||||||| |||||| | ||||| |||||||||    | |  |   | || ||    |  ||| | |||  |        ||   |  |   ||  ||   |   |  ||||  |  | |||     
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtgatgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata

upper sequence: AT2G34880.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
CCGTCTGCAGGGATCTCTACTATCCTTTGAGGATTGTGAGATCTCAGGGGTTCAGGTGCCATGGCTCTATGTGGGCATGTGCTTTTCAACGTTTTGTTGGgtaagtt-tacatatatcactatctaatcatttttgtcattttgtttcctatttctcatctaaatgtttgatgttttgattgtaacag-------------
||| ||||  || ||| |||| |  |||||  |   ||| |||||||| |||| ||| |||||||||||||| || |||||||| ||| | |||||||||||||||| |    ||  | ||||| || | | |   | |   |       |    | |   ||| |    |      || | |    |             
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagttatgggaattcctctatcaaagc-tgtacatgacgctaaaaagaaaaattaaataaaaagggcaaaaggcagaatctcgttgttcttcagctttg