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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacatatatcactatctaatcatttttgtcattttgtttcctatttctcatctaaatgtttgatgttttgattgtaacagCATGTTGAGGACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCTAGAGA

Basic information

species Arabidopsis thaliana
transcript AT2G34880.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34880.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G09970.1 (Glycine max), 3'ss of exon 6
gtaagtttacatatatcactatctaatcatttttgtcattttgtttcctatttctcatctaaatgtttgatgttttga----------------ttgtaacagCATGTTGAGGACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCTAGAGA
     | |   |  |||   |  |  |||||| | || |||     ||||  | |   ||| |    | |    |||                 ||| ||||||||||||||||| |||| || |||||||| ||||||   ||||  || || |||||||||||||| ||||| || |||||||||||  | |   | || |
---catatgtcttgatcttgaatttttcatttctttcctttcaaaccctaactatttcctagaaagataacacattgtcatcatttcctgcttcttggaacagCATGTTGAGGACCATCACCTCTATTCACTAAACTATTTGCACTGGGGGGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTGCAGCCTTGGAAA

upper sequence: AT2G34880.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA08G13610.1 (Glycine max), 3'ss of exon 2
gtaagtttacatatatc-actatctaatcatttttgtcattttgtttccta-tttctcat-----ctaa---atgtttgatgttt-----tgattgtaacagCATGTTGAGGACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCTAGAGA
  ||||    || | |  | | |   ||   ||||||        ||| || ||||  ||     ||||   || |||  |||||     |  ||| ||||||||||||||||| |||| || |||||||| || ||||  ||||  || || |||||||||||||| ||| |||| |||||||||||  | || || ||  
--aagtaataatgtcttgaattttgcattgcttttgtttcagatcttcatactttcctataaagactaacacatttttcttgtttctttctccttggaacagCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATTCCTGGAAGCCATGCTCCAGGTCTGGAAG

upper sequence: AT2G34880.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA05G30470.1 (Glycine max), 3'ss of exon 3
--gtaagtttacatatatcactatctaatcatttttgtcattttgtttcctatttctcatctaaa---------tgtttgatgttt-----tgattgtaacagCATGTTGAGGACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCTAGAGA
  ||||  ||   |   ||| | |   ||   ||||||        ||| || ||  ||   |||         | |||  |||||     |  ||| ||||||||||||||||| |||| || |||||||| || ||||  ||||  || || |||||||||||||| |||||  | |||||||||||  | || || ||  
aagtaatattgtct---tcaattttgcattgcttttgtttcagatcttcatactttccaataaaaactaacacctttttcttgtttctttctccttggaacagCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTAGCTGGAAGCCATGCTCCAGGTCTGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcattttgtttcctatttctcatctaaatgtttgatgttttgattgtaacagCATGTTGAGGACAATCATCTATATTCACTGAACTATCATCACTTTGGCGAGCCAAAAGTATGGTACGGAGTTCCGGGAAGCCATGCAACTGGGCTAGAGA
     attttgttt  TA-rich tract