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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttccaacatttattagtagtttagtattcatttgtggattcttcgtttagagtatcaatggttttttcttatgctatttgtagGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGATTGAATTTTCTGTTAAGTTTGAACATTTGGTTGTAAGTTAGCTTCTACAG

Basic information

species Arabidopsis thaliana
transcript AT2G33585.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19879041|gb|AU239872.1|AU239872
EST:     CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAG                         GTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGAT
genomic: CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAGgtaaatttcc ... ctatttgtagGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGAT
EST: gi|19799937|gb|AU231227.1|AU231227
EST:     CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAG                         GTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGAT
genomic: CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAGgtaaatttcc ... ctatttgtagGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGAT
EST: gi|86086230|gb|DR381989.1|DR381989
EST:     CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAG                         GTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCATAAGAT
genomic: CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAGgtaaatttcc ... ctatttgtagGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGAT
EST: gi|19874953|gb|AU235784.1|AU235784
EST:     CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAN                         GTTACTGGTTTTGATNTATGGAAACANGAACGGA
genomic: CTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAGgtaaatttcc ... ctatttgtagGTTACTGGTTT-GATATATGGAAACAAGAACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgtggattcttcgtttagagtatcaatggttttttcttatgctatttgtagGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAGTCAGAAGATTGAATTTTCTGTTAAGTTTGAACATTTGGTTGTAAGTTAGCTTCTACAG
                                 ttttttcttatgct  CT-rich tract
                                 ttttttcttat  TA-rich tract