Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19879041|gb|AU239872.1|AU239872EST: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAG GCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
genomic: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAGgtaccaattt ... tttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
EST:
gi|19799937|gb|AU231227.1|AU231227EST: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAG GCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
genomic: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAGgtaccaattt ... tttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
EST:
gi|86086230|gb|DR381989.1|DR381989EST: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAG GCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
genomic: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAGgtaccaattt ... tttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
EST:
gi|19874953|gb|AU235784.1|AU235784EST: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAG GCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
genomic: CTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAACAAGAGgtaccaattt ... tttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtttttattgaatcctctagtctcatttccacagttatctctggtttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAG
gtttgat putative branch site (score: 5)
ttattgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccaattttgatttttttgcacatccaaaaaagtttgtgtttttattgaatcctctagtctcatttccacagttatctctggtttgatttagGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGGAAACCAATCGCTGACCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA