Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116401460|gb|EG444052.1|EG444052EST: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST:
gi|116401458|gb|EG444050.1|EG444050EST: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST:
gi|116401467|gb|EG444059.1|EG444059EST: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST:
gi|116401463|gb|EG444055.1|EG444055EST: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAACATCACCACCAATGGGATGTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagcttttttcaattttccacaataagtaaaataacactctttcttcttactctatctctttaaagtttaggtttttttccattactctgatttgaaccttaacctttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA