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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttttttcaattttccacaataagtaaaataacactctttcttcttactctatctctttaaagtttaggtttttttccattactctgatttgaaccttaacctttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G33400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401460|gb|EG444052.1|EG444052
EST:     CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA                         AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST: gi|116401458|gb|EG444050.1|EG444050
EST:     CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA                         AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST: gi|116401467|gb|EG444059.1|EG444059
EST:     CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA                         AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
EST: gi|116401463|gb|EG444055.1|EG444055
EST:     CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAA                         AGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT
genomic: CCAACAAAAAACGCAGAAATTCCATTAGGAAGATCCTTCCTCGAGATCAAgtaagctttt ... tttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagtttaggtttttttccattactctgatttgaaccttaacctttattgcagAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAGATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAG
                                     ccttaac  putative branch site (score: 3)
                                           cctttatt  CT-rich tract
            ttttttt  TA-rich tract