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gtatgtttcttctatgtacagtacaatacaatggtgaaaagtctttgtttttatttcctgtatgctcatcctgttatgttcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG
species | Arabidopsis thaliana |
transcript | AT2G33150.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|125015925|gb|EL088194.1|EL088194
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGAEST: gi|125298740|gb|EL312825.1|EL312825
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGA
EST: AGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGEST: gi|125118197|gb|EL167016.1|EL167016
genomic: AGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGG
EST: CTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAATGCTCATCTGGGCTTCAGGEST: gi|301501479|gb|HO207019.1|HO207019
genomic: CTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTTGAATAGACAGTGCTCATCTGGGCTTCAGEST: gi|86046971|gb|DR342726.1|DR342726
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGT-GAATAGACAGTGCTCATCTGGGCTTCAG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTEST: gi|86046960|gb|DR342715.1|DR342715
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGT
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|301501943|gb|HO207483.1|HO207483
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|152035756|gb|BP855676.2|BP855676
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|86046966|gb|DR342721.1|DR342721
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAAEST: gi|86046967|gb|DR342722.1|DR342722
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAA
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAEST: gi|301501553|gb|HO207093.1|HO207093
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATA
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|116412117|gb|EG454709.1|EG454709
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|301501331|gb|HO206871.1|HO206871
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|86046955|gb|DR342710.1|DR342710
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTEST: gi|301501980|gb|HO207520.1|HO207520
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCT
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|86046964|gb|DR342719.1|DR342719
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGEST: gi|124772455|gb|EH862584.1|EH862584
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGG
EST: CAGAGTAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAAEST: gi|86046951|gb|DR342706.1|DR342706
genomic: CAGAG-AGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAA
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTEST: gi|86046962|gb|DR342717.1|DR342717
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCT
EST: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG AAACCGTGGCTGTCAGAACTGTGGAATAGACA
genomic: TCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGgtatgtttct ... tcatttgcagAAACCGTGGCTGTCAGAACTGTG-AATAGACA
tgaaaagtctttgtttttatttcctgtatgctcatcctgttatgttcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG
ttcattt CT-rich tract
tctttgtttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcttctatgtacagtacaatacaatggtgaaaagtctttgtttttatttcctgtatgctcatcctgttatgttcatttgcagAAACCGTGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATTAAAGCGGGATTTTATGACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT