1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaataattacttacaaagctacgactgtggaagtctgaaaaccgaaaaaactgcagaggcttgtgatttccatttacacagatatgctagtatacgtggaaaatacattgttctttctgtatttggctttttctaagtagcacactattggacatattgcag
species | Arabidopsis thaliana |
transcript | AT2G33150.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAGAGAAGTGTTGCAATGCAAAGAGGACTTCCCGTTCTTGGTGTATTCAG GACATTTGCTGCAGTTGGTGTTGACCCTEST: gi|47831456|gb|CK121140.1|CK121140
genomic: AAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaata ... catattgcagGACATTTGCTGCAGTTGGTGTTGACCCT
EST: AAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAG GACATTTGCTGCAGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGCEST: gi|301501548|gb|HO207088.1|HO207088
genomic: AAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaata ... catattgcagGACATTTGCTGCAGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGC
EST: AAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAG GACATTTGCTGCAGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGCEST: gi|125203947|gb|EL218901.1|EL218901
genomic: AAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaata ... catattgcagGACATTTGCTGCAGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGC
EST: CAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAG GACATTTGCTGCAGTTAGGTGTTGACCCTGCAATCATGGGTAT
genomic: CAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaata ... catattgcagGACATTTGCTGCAGTT-GGTGTTGACCCTGCAATCATGGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAAGAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGgtgggtaataattacttacaaagctacgactgtggaagtctgaaaaccgaaaaaactgcagaggcttgtgatttccatttacacagatatgctagtatacgtggaaaatacattgttctttctgtatttggctttttctaagtagcacactattggacatattgcag
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT