1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTCTACAGgtctgacttgtacttccttttcttccatctcttctaaaaactctactatctcatccactaaataagttataagtttttcttatttcaaaatatgttgaacatgtcaaaatatacctatgtag
species | Arabidopsis thaliana |
transcript | AT2G31865.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTTACTCTGAGTTATGATACTCTACAG GAAGAAATAAGGTTCGTGATCAACCCGGAACTTATCGCTGGCATGATCTTTEST: gi|116428034|gb|EG470626.1|EG470626
genomic: CCTTACTCTGAGTTATGATACTCTACAGgtctgacttg ... acctatgtagGAAGAAATAAGGTTCGTGATCAACCCGGAACTTATCGCTGGCATGATCTTT
EST: TTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTCTACAG GAAGAAATAAGGTTCGTGATCAACCCGGAACTTATCGCTGGCATGATCTTT
genomic: TTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTCTACAGgtctgacttg ... acctatgtagGAAGAAATAAGGTTCGTGATCAACCCGGAACTTATCGCTGGCATGATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTCTACAGgtctgacttgtacttccttttcttccatctcttctaaaaactctactatctcatccactaaataagttataagtttttcttatttcaaaatatgttgaacatgtcaaaatatacctatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG