1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatcatagaaacactcctagttaagccttcttcgccgttgaatccatttctttcagatgattcatgagtatgctttaggttattctccttttgatccattttttattggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTC
species | Arabidopsis thaliana |
transcript | AT2G31865.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGCTGATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAG ATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAEST: gi|116428053|gb|EG470645.1|EG470645
genomic: CCAAGGCTGATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAGgtatcataga ... attggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTA
EST: CCAAGGGTGATTCGTGGGCTAATTCCGTCACCCCACTTTGCTCCATTGAG ATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAEST: gi|116428034|gb|EG470626.1|EG470626
genomic: CCAAGGCTGATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAGgtatcataga ... attggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTA
EST: CCAAGGCTGATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAG ATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTA
genomic: CCAAGGCTGATTCGTGGGCTAATTCTGTCACCCCACTTTGCTCCATTGAGgtatcataga ... attggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTA
attcatgagtatgctttaggttattctccttttgatccattttttattggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTC
ttttgat putative branch site (score: 4)
ttttttatt putative PPT
atccattttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatagaaacactcctagttaagccttcttcgccgttgaatccatttctttcagatgattcatgagtatgctttaggttattctccttttgatccattttttattggagtagATTCACACCTCGGGAGCTATAGAAGATCAACCTTGTGAAGCTCTTGAAGTAGATTTTGCAGATGAGTATTTTGGAGGCCTTACTCTGAGTTATGATACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG