1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTACTGGGGATCTAGACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAGgtttgtttcgcaatctactttcatctcttagtgaatgcataaccccgtgaattcttaatttcttataatgatactccaattgttcggataaagtcccaaa...
species | Arabidopsis thaliana |
transcript | AT2G31810.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAG GTTGCAAGAACCGGTCGTGTGGCATTGGCTCGTGAATCGGGAGEST: gi|164042024|gb|ES155274.1|ES155274
genomic: ACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAGgtttgtttcg ... tcaatcacagGTTGCAAGAACCGGTCGTGTGGCATTGGCTCGTGAATCGGGAG
EST: TGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAG GTTGCAAGAACCGGTCGTGTGGCATTGGCTCGTGAATCGGGAGTGGACTCCEST: gi|124737402|gb|EH828804.1|EH828804
genomic: TGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAGgtttgtttcg ... tcaatcacagGTTGCAAGAACCGGTCGTGTGGCATTGGCTCGTGAATCGGGAGTGGACTCC
EST: ACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAG GTTGCAAGAACCGGTCGT
genomic: ACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAGgtttgtttcg ... tcaatcacagGTTGCAAGAACCGGTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACTGGGGATCTAGACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGTATATGTGAGgtttgtttcgcaatctactttcatctcttagtgaatgcataaccccgtgaattcttaatttcttataatgatactccaattgttcggataaagtcccaaa
- - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaag