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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgaataatatttgcttaaagtcgtttccttttggcctttgctttgattgattctttgtgcattaaaatcagggtgaggaagcacacaatttcagtatttgttggagacgaaagcggaatgattaataggattgcagGAGTGTTTGCAAGGAGAGGATACAATATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTGTGGAACTGAAAGGGT

Basic information

species Arabidopsis thaliana
transcript AT2G31810.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31810.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os11g14950.1 (Oryza sativa), 3'ss of exon 1
-----------------------------gtactgtga-ataatatttgcttaaagtcgtttccttttggcctttgctttgattgattctttgtgcattaaaatcagggtgaggaagcacacaatttcagtatttgttggagacgaaagcggaatgattaataggattgcagGAGTGTTTGCAAGGAGAGGATACAATATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTGTGGAACTGAAAGGGT
                              ||  |  |  | | |  ||| |  | | ||| | |||||  || |  |||  |  ||  ||| |    ||  || |   | | |   || ||| | ||||| ||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| || ||||||||||| ||||||                                                                    
cttttaagttataaataatagcatctgccatatagaaatgttaaagatgcctgtattagttccattttgatctatatttttttctatg-tttatcttgtagGATTA---TAAAGCGTCATACACTATCAGTTTTTGTTGGAGATGAAAGTGGGATGATTAATCGAATTGCTGGAGTTTTTGCTAGAAGAGGATACAACATTGAG--------------------------------------------------------------------

upper sequence: AT2G31810.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv05s0094g01110.t01 (Vitis vinifera), 3'ss of exon 1
---------------gtac-tgtgaataatatt-tgcttaaagtcgtttccttttg----gcctttgctttga--ttgattctttgtgcattaaaatcagggtgaggaagcacacaatttcagtatttgttggagacgaaagcggaatgattaataggattgcagGAGTGTTTGCAAGGAGAGGATACAATATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTGTGGAACTGAAAGGGT
               ||   | |    ||| || | ||  |       |    |||    || | | |||| |   || |  ||| |    ||||   || ||| ||   |||||||||||||||||||||||||| ||||| |||||||||||| | ||||| || || |||||||| || ||||| || |||||                                                                     
attctggatgtttatgtgtgtctatgcaattttatactctacactacctagccttgaaatgcttattcttttaatctgttgatttcttttctaaatctagAGTGCGGCGCCACACAATTTCAGTATTTGTTGGAGATGAAAGTGGAATGATTAATCGAATTGCCGGGGTCTTTGCAAGAAGGGGATATAACATTGACTCC-----------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacaatttcagtatttgttggagacgaaagcggaatgattaataggattgcagGAGTGTTTGCAAGGAGAGGATACAATATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTGTGGAACTGAAAGGGT
                                      gattaat  putative branch site (score: 3)
                                   aatgattaata  TA-rich tract