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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGgcatagtccttatctctctcatacacgcacacacagtgtgcttaggtttactgacacactgaaagatctcctttcttttag

Basic information

species Arabidopsis thaliana
transcript AT2G31810.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164088933|gb|ES208836.1|ES208836
EST:     TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG                         AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTC
genomic: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTC
EST: gi|164148702|gb|ES197700.1|ES197700
EST:     TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG                         AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTT
genomic: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTT
EST: gi|124954217|gb|EL029331.1|EL029331
EST:     GGATACAATATCCAG                         AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACA
genomic: GGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACA