1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcatagtccttatctctctcatacacgcacacacagtgtgcttaggtttactgacacactgaaagatctcctttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTT
species | Arabidopsis thaliana |
transcript | AT2G31810.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCEST: gi|164148702|gb|ES197700.1|ES197700
genomic: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTC
EST: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTEST: gi|124954217|gb|EL029331.1|EL029331
genomic: TTCTTAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTT
EST: GGATACAATATCCAG AGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACA
genomic: GGATACAATATCCAGgcatagtcct ... tttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACA
gcacacacagtgtgcttaggtttactgacacactgaaagatctcctttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTT
tactgac putative branch site (score: 1)
tctcctttctttt putative PPT
tttctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatagtccttatctctctcatacacgcacacacagtgtgcttaggtttactgacacactgaaagatctcctttcttttagAGCTTGGCCGTAGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGAATCGGTCAGCAAATTGGTGCAGCAACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG