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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagtttcaccttcccttttggcacaatgtgactcaacttcatttcattatatgcgtaacgagaaaacaagagttgagaattgatgttgtgaatgtgtcttgtctcagATGGATGAAAACGAGAAAGATCCGCTAGTTAGTGCGGAAAACGGGAGCGGATTGATATCAGACAATGGAGTGCAAAAGCAGGATCCTGTATGGAATTCAA

Basic information

species Arabidopsis thaliana
transcript AT2G30460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164179357|gb|ES176968.1|ES176968
EST:     CACTCGAAACCCAACAGAAGGCCACAGGAACATCAACTCAATTGCCTCAG                         ATGGATGAAAACG
genomic: CACTCGAAACCCAACAGAAGGCCACAGAAACATCAACTCAATTGCCTCAGgtaaatagtt ... cttgtctcagATGGATGAAAACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtaacgagaaaacaagagttgagaattgatgttgtgaatgtgtcttgtctcagATGGATGAAAACGAGAAAGATCCGCTAGTTAGTGCGGAAAACGGGAGCGGATTGATATCAGACAATGGAGTGCAAAAGCAGGATCCTGTATGGAATTCAA
                                            tcttgtctc  CT-rich tract
          aaaacaa  TA-rich tract