1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtaattcttcttcccaaagtttcttggttccatacttccattagtttgtcaaacgattttcaggtcaaaggcctaatgatccattttatttcatttgcagTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTA
species | Arabidopsis thaliana |
transcript | AT2G30460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ttgtcaaacgattttcaggtcaaaggcctaatgatccattttatttcatttgcagTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTA
gcctaat putative branch site (score: 3)
ttttatttc putative PPT
attttatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttcttcccaaagtttcttggttccatacttccattagtttgtcaaacgattttcaggtcaaaggcctaatgatccattttatttcatttgcagTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -tcccaaa
- - - - - - - - - - - - - - -ccatact
- - - - - - - - - - - - - - - - - - - - - agtttgt
- - - - - - - - - - - - - - - - - - - - - - - - -caaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaggc