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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataattatacgcatactcgaacaatttatgattctttgcttctatcgcgacttaaataaatgtatacgcattctagGAGCCATGAATCAGCTGGCGAGAAATTTAGCATGCGAGTGGGCGAGTGATAATATAAGGGCTAATTCTGTTTGTCCATGGTTCATTACAACTCCGTCAAC

Basic information

species Arabidopsis thaliana
transcript AT2G29370.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125200505|gb|EL215459.1|EL215459
EST:     GGCTGGAGTTGTAAATTTGGGTAATACATCAATCTATGGAGCAACCAAAG                         GAGCCATGAATCAGCTGGCGAGAAATTTAGCA
genomic: GGCTGGAGTTGTAAATTTGGGTAATACATCAATCTATGGAGCAACCAAAGgtataattat ... cgcattctagGAGCCATGAATCAGCTGGCGAGAAATTTAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttatgattctttgcttctatcgcgacttaaataaatgtatacgcattctagGAGCCATGAATCAGCTGGCGAGAAATTTAGCATGCGAGTGGGCGAGTGATAATATAAGGGCTAATTCTGTTTGTCCATGGTTCATTACAACTCCGTCAAC
                            acttaaataaatgtat  TA-rich tract