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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgtgtgtgtatatatataagcttctcctcctcctcgtctatgagcttggatcgacaatgaccaaaatcatgttgaattttgtttgcttcgtttgtatagGTACCCAATGTGGGAATAGGTGTACTAAAGCCGACGACTGAGTGTACAGCAGAAGAGTTCTCATTTATAATAGCTACAAATCTGGAGTCAACTTTCCATT

Basic information

species Arabidopsis thaliana
transcript AT2G29370.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124883560|gb|EH962462.1|EH962462
EST:     AACTCATGGAAACTGTTTCCTCTCTCTTCCAAGGAAAACTCAGCATCCTC                         GTACCCAATGTGGGAATAGGTGTACTAAAGCCGACGA
genomic: AACTCATGGAAACTGTTTCCTCTCTCTTCCAAGGAAAACTCAGCATCCTCgtaagtgtgt ... gtttgtatagGTACCCAATGTGGGAATAGGTGTACTAAAGCCGACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggatcgacaatgaccaaaatcatgttgaattttgtttgcttcgtttgtatagGTACCCAATGTGGGAATAGGTGTACTAAAGCCGACGACTGAGTGTACAGCAGAAGAGTTCTCATTTATAATAGCTACAAATCTGGAGTCAACTTTCCATT
                                         cttcgttt  CT-rich tract
                              aattttgttt  TA-rich tract