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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAgtaagattcttgtcattttcatgctctttcaaagaaaatattcagtttttctttacatatctttatgggtgttgttttttattttcag

Basic information

species Arabidopsis thaliana
transcript AT2G26000.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 7
AGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAgtaagattcttgtcattttcatgctctttcaaagaaaatattcagtttttctttacatatctttatgggtgttgttttttattttcag
|| |||| || || ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||| ||||||||||||| || |||||  ||     | | || |||| | |          |||   ||||    ||| |  ||| |     | |  ||||||||| |||
AGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtcaaccaactctc-tgctttct----------attttattttatactacttcacttcacctcggatactttttattt-cag

upper sequence: AT2G26000.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 5
AGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAgtaag--attcttgtcattttcatgctctttcaaagaaaatattcagtttttctttacatatctttatgggtgttgttttttattttcag------------------
| ||| | ||||||||||   |||| ||||| || || || ||||||||||||||||| ||||| ||||| || || ||| ||||||||||||| || || ||  ||| | || ||| ||   |||| ||        | |     |         | || |   || |||||  | | | ||||||                   
AAAGACTAGACCAAGACATCAGTGGGATTCTTACTACTATATGCAATCATTCCTTCCACTGCTCTTGTATATCAAAATGGACAGATTCTTCTTGTCCGgtgagtgattttggtaattctctctctctctc--------tctctctctcactcacttacatgtgcgtgtgtgttcctatctgttttcatagctctgactggaattga