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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatctatctagcaaatctcgtcatgggaaattgtgcatattcgctagcttgtgagaccatgctccatttctcattgatctttgatttag

Basic information

species Arabidopsis thaliana
transcript AT2G26000.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116413542|gb|EG456134.1|EG456134
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413539|gb|EG456131.1|EG456131
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAGGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413535|gb|EG456127.1|EG456127
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413537|gb|EG456129.1|EG456129
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAGGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413543|gb|EG456135.1|EG456135
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413540|gb|EG456132.1|EG456132
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413534|gb|EG456126.1|EG456126
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413533|gb|EG456125.1|EG456125
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413544|gb|EG456136.1|EG456136
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAGGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413528|gb|EG456120.1|EG456120
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|124742712|gb|EH833874.1|EH833874
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGG
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGG
EST: gi|116413525|gb|EG456117.1|EG456117
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413541|gb|EG456133.1|EG456133
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
EST: gi|116413545|gb|EG456137.1|EG456137
EST:     GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG                         GGAGAAGAGGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA
genomic: GTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatcta ... tttgatttagGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAGgtattatctatctagcaaatctcgtcatgggaaattgtgcatattcgctagcttgtgagaccatgctccatttctcattgatctttgatttag

- - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA