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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatttcgtgtctctatcagtttctcgtctttgttgcgattagagatatagtttgctaatcttggctaattaacctaagaattttcctcatgcagGTCAGGTCAGTCCGTGA

Basic information

species Arabidopsis thaliana
transcript AT2G25330.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagatatagtttgctaatcttggctaattaacctaagaattttcctcatgcagGTCAGGTCAGTCCGTGA
                           aattaac  putative branch site (score: 2)
                                         ttttcctcat  putative PPT
                                   taagaatttt  TA-rich tract