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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagttcacactagatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag

Basic information

species Arabidopsis thaliana
transcript AT2G25330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaa-gttcacact----agatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag
   ||| | ||  |||||||||| || || ||||| | |||||| || | ||||||||| ||||| || ||||||||||||||||||||||| ||  ||||| || || |||    |     | || | | || |  |  | ||     |  |||  |  ||   | | |    | || | | |||| ||| |||||   | |                
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaatcttttatcgttttctgtgc---accatttgcttaggcttatagttagctatcagatatatactgt-gttgtttgtgaa---------------

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G07050.1 (Glycine max), 5'ss of exon 1
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaa-gttcacactagatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag
   ||| | ||  |||||||||| || || ||  | | |||||| || | ||||||||| ||||| ||  |||||||||||||||||||||| ||  ||||| || || ||||   |  |     || ||  ||| | |  | |||      |  || |   |  |||  | | | | | | ||  ||| |||   ||     |||         
AAGGATTTGCTGAAGAAGAGGAAAATCACGGGCTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGCAATAGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgttctttcccggcaaatcttt-tatcgttttctgtgca---ccacttgcttaggcttatcgt-tagctgtcagatatttgctgtg--ttgtcagtgag--------

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 1
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtat-gtaagttcacac----tagatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag
   ||||||||  ||||||||||||| || ||| | | |||||| || | ||||||||| |||||||| || |||||||| || ||||||||||| |||||||| ||||  |   ||    |||| ||||| |||  ||| |  || || || |||||    || | |||||  | |  | |  |  ||||  |  || |||| | |            
AAAGATCTTCTAAAGAAGAGGAAGATTACGGGTTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGTGATTGTCGCCTGATTGTTTATCCTCGAGgtatcgtaaactgttacattgtagacttctc-ttgtgtctga-attttg-tggtttattgattacatactat--tattagataga-gttgtc-tgctatcttatttt------------

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ25012 (Selaginella moellendorffii), 5'ss of exon 1
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagttcacactagatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag
   ||||| ||  ||||| ||| ||| || || |||| ||| || || ||| | |||||| |||| || ||||| ||||| |||||||| ||||| |||||||||||| |    |     | |    |   | || | ||  |  |||   ||   |                                                         
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGCCTTATTGTCTATCCTCGAGgtatgtaactgtttatc---tctgctctacgacctgacgtgtttttgtaaaatgcag---------------------------------------------------------

upper sequence: AT2G25330.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ15334 (Selaginella moellendorffii), 5'ss of exon 1
GTTGATCTTCTTGAGAAGAGGAAGATAACCGGTCTTTACATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagttcacactagatttctcattgcatcttatgttatgctgttttatatggtagagactataatgtcggttttatattgttgttgtaccttactcttgatggtctcag
   ||||| ||  ||||| ||| ||| || || |||| ||| || || ||| | |||||| |||| || ||||| ||||| |||||||| ||||| |||||||||||| |    |     | |    |   | || | ||  |  |||   ||   |                                                         
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGTCTTATTGTCTATCCTCGAGgtatgtaactgtttatc---tctgctctacgacctgacgtgtttttgtaaaatgcag---------------------------------------------------------