1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtgttttactacgagtgtgatatctcatcttttctatccacgtactttccttacttgcttataacaaatcctgaccatatgtgttctctttgattactattgcagGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATTCAAACTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCCGAAAGCAAAAGAATCAG
species | Arabidopsis thaliana |
transcript | AT2G24030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACAGGAACATCAGTTTTGGAGTCTAACAAAGAGCAGTTTATTGTATTG GCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAAGATATTTCAA-CEST: gi|116394010|gb|EG436602.1|EG436602
genomic: CTACAGGAACATCAGTTTTGGAGTCTAACAAAGAGCAGTTTATTGTATTGgtaagtgttt ... actattgcagGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATT-CAAAC
EST: CTACAGGAACATCAGTTTTGGAGTCTAACAAAGAGCAGTTTATTGTATTG GCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATTCAAACT
genomic: CTACAGGAACATCAGTTTTGGAGTCTAACAAAGAGCAGTTTATTGTATTGgtaagtgttt ... actattgcagGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATTCAAACT
ttacttgcttataacaaatcctgaccatatgtgttctctttgattactattgcagGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATTCAAACTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCCGAAAGCAAAAGAATCAG
ttataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttttactacgagtgtgatatctcatcttttctatccacgtactttccttacttgcttataacaaatcctgaccatatgtgttctctttgattactattgcagGCTAGAGCTGATCCTGTAGGAGAAAAGCGTAAAGCAGAGGATATTCAAACTGGTTTGAACGAAGATCTTCAAGTGAAAAGGCCGAAAGCAAAAGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA