1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAGCCATCGATAATAATCGCCCACCTCCTGCGACGGACACGACACCATCTCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGgtttgtactgtctgtgcatcgtattttttatccatccccgacagagaacattgttatgattctgcacttttcgtattttgtttggtgatgcgattgtcta...
species | Arabidopsis thaliana |
transcript | AT2G24030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAGTCGCTGAAACCGAACTTTCCTTTCTAGTCGGAACGATCAATGCCAG GACAACAAAGTGAGGATCAAGTTCGGGA-GCGATCAAACGAGAAATTGAGAEST: gi|116394012|gb|EG436604.1|EG436604
genomic: TCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGgtttgtactg ... tttttcgtagGACAACAAAGTGAGGATCAAGTTCGGGAAGCGATCAAACGAGAAATTGAGA
EST: TCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAG GACAACAAAGTGAGGATCAAGTTCGGGAAGCGATCAAACGAGAAATTGAGAEST: gi|116394010|gb|EG436602.1|EG436602
genomic: TCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGgtttgtactg ... tttttcgtagGACAACAAAGTGAGGATCAAGTTCGGGAAGCGATCAAACGAGAAATTGAGA
EST: TCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAG GACAACAAAGCGAGGATCAAGTTCGGGAAGCGATCAAACGAGAAATTGAGA
genomic: TCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGgtttgtactg ... tttttcgtagGACAACAAAGTGAGGATCAAGTTCGGGAAGCGATCAAACGAGAAATTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCCATCGATAATAATCGCCCACCTCCTGCGACGGACACGACACCATCTCCGTCGCTGAAACCGAACTTTCCTTTCTTGTCGGAACGATCAATGCCAGgtttgtactgtctgtgcatcgtattttttatccatccccgacagagaacattgttatgattctgcacttttcgtattttgtttggtgatgcgattgtcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaca