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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatcttataacatctagaacataaataatcttcaaagtttatattatataagatataaataatcattctattaagtatcgtatgggtggataacccgatttacggtttggttcaaatctttttgtgtattgcttaactaaaagttaataacaaattgcagAATCGCTAGAGATCCCGGGTGCTACAATTCTTCTTATTGTGGTTACACCGAGTGACATAGGGGCAATATTCAGAGACGACCTGAGATATACGGGAGGTGA

Basic information

species Arabidopsis thaliana
transcript AT2G23680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086227|gb|DR381986.1|DR381986
EST:     GCTCTCCTCACCGTTATTCTCAGGCNNNNNNNACCAAAACCATTTTCATG                         AATCGCTAGAGATCCCGGGTGCTACAATTCTTCTTATTGTGGTTACACCGA
genomic: GCTCTCCTCACCGTTATTCTCAGGCTTTTTTTACCAAA-CCATTTTCATGgtatgtaatc ... caaattgcagAATCGCTAGAGATCCCGGGTGCTACAATTCTTCTTATTGTGGTTACACCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttcaaatctttttgtgtattgcttaactaaaagttaataacaaattgcagAATCGCTAGAGATCCCGGGTGCTACAATTCTTCTTATTGTGGTTACACCGAGTGACATAGGGGCAATATTCAGAGACGACCTGAGATATACGGGAGGTGA
                                       taataac  putative branch site (score: 1)
                           ttaactaaaagttaat  TA-rich tract