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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcatgtctttcatattttaaacatttggatttatgtttaatttttaattttttaatgttggtttacttcttttatttgtgtgtaaagTTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCAAACAATATAATGGCTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT

Basic information

species Arabidopsis thaliana
transcript AT2G23680.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086227|gb|DR381986.1|DR381986
EST:     CCAGTTATGATCACGTTGTTCCTAAGATGGCTCACGTCCATCGTTGCAGT                         TTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCAAACAATATAAT
genomic: CCAGTTATGATCACGTTGTTCCTAAGATGGCTCGCGTCCATCGTTGCAGTgtcagtcatg ... gtgtgtaaagTTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCAAACAATATAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttaatttttaattttttaatgttggtttacttcttttatttgtgtgtaaagTTTTCTTATGATATTGGATCAAACGAAATGGAAGTACTCAAACAATATAATGGCTTCACTATTAGCTCCTTACCTCTTCTCTAGCCTTCCTATTGTTATT
                 ttttaat  putative branch site (score: 3)
                                 cttcttttatttgt  putative PPT
     taatttttaatttttt  TA-rich tract