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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatatatatgcgtctcctcttgcttgatggaagctctgtttgattgttcatacttacttgttatccaagaaatacgtagtttctgtggttacgatttgagttatgcaacaatgtgccattatctttagaagattacaagtcataatctcagctgttacttgcagTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTTATGAACAGTGCCTTTGAATACACGCTTAAAACCGGAGGGCTTATGCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G21430.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051093|gb|DR346848.1|DR346848
EST:     GCAAACTCGTTAGTCTCAGTGAACAACAGCTCGTCGATTGTGATCACGAG                         TGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT
genomic: GCAAACTCGTTAGTCTCAGTGAACAACAGCTCGTCGATTGTGATCACGAGgtatgaatat ... ttacttgcagTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT
EST: gi|86077617|gb|DR373374.1|DR373374
EST:     ACAACAGCTCGTCGATTGTGATCACGAG                         TGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT
genomic: ACAACAGCTCGTCGATTGTGATCACGAGgtatgaatat ... ttacttgcagTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT
EST: gi|164214461|gb|ES165224.1|ES165224
EST:     CAACAGCTCGTCGATTGTGATCACGAG                         TGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT
genomic: CAACAGCTCGTCGATTGTGATCACGAGgtatgaatat ... ttacttgcagTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtgccattatctttagaagattacaagtcataatctcagctgttacttgcagTGTGATCCAGAAGAGGAAGGTTCATGTGATTCTGGTTGTAACGGTGGGCTTATGAACAGTGCCTTTGAATACACGCTTAAAACCGGAGGGCTTATGCGAG
        attatcttta  TA-rich tract