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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAAGACGCTAATCAAGCCCCGATTCTCCCTACTCAGAATCTTCCGGAGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaatcatcaatgtgatgataatgatgtcatttggagaatatgaataataatggacttgaatgatcactgtttattag

Basic information

species Arabidopsis thaliana
transcript AT2G21430.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051090|gb|DR346845.1|DR346845
EST:     AG-AGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAG                         GGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCTTGAAG
genomic: AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCTTGAAG
EST: gi|86051095|gb|DR346850.1|DR346850
EST:     AG-AGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAG                         GGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCCTTGAA
genomic: AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCC-TTGAA
EST: gi|86051093|gb|DR346848.1|DR346848
EST:     AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAG                         GGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCTTGAAGGT
genomic: AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACAGGTGCCCTTGAAGGT
EST: gi|86051094|gb|DR346849.1|DR346849
EST:     AG-AGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAG                         GGATCTTGGTGGTTCTTGGCTGGGAGTTTTAGCACTACAGGTGCCCTTTGA
genomic: AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTG-TGGTTCTTG-CTGG-AGTTTTAGCACTACAGGTGCCCTT-GA
EST: gi|86051098|gb|DR346853.1|DR346853
EST:     AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAG                         GGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACA
genomic: AGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTGTGGTTCTTGCTGGAGTTTTAGCACTACA
EST: gi|86051099|gb|DR346854.1|DR346854
EST:     G-AGTTTGATTGGAGAGATCGCGGCGCGGTTTACTCCCGTGAAAAACCAG                         GGATCTTGTGGTTCTTGCT
genomic: GGAGTTTGATTGGAGAGATCGCGGCGCGGTT-ACTCCCGTGAAAAACCAGgtaattcaat ... tgtttattagGGATCTTGTGGTTCTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTAAAGACGCTAATCAAGCCCCGATTCTCCCTACTCAGAATCTTCCGGAGGAGTTTGATTGGAGAGATCGCGGCGCGGTTACTCCCGTGAAAAACCAGgtaattcaatcatcaatgtgatgataatgatgtcatttggagaatatgaataataatggacttgaatgatcactgtttattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC