1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatggtctcttccttgttttcaagttttattagctgagaattgcaatgggaaagtaggctaatatggaatcttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCGGGAGAGTACTACATAAAGTCGATGATAGAAGCCGATCGAGTGGCTTCTC
species | Arabidopsis thaliana |
transcript | AT2G20860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATG GGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCTEST: gi|124758824|gb|EH848954.1|EH848954
genomic: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATGgtaatggtct ... ttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCG
EST: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATG GGATTCAGATACGTAGCGTCAGGACCAATGGTGAGGTCGTCGTACAAAEST: gi|47831501|gb|CK121185.1|CK121185
genomic: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATGgtaatggtct ... ttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAA
EST: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATG GGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCGEST: gi|124756380|gb|EH846510.1|EH846510
genomic: ACGTGACACCAGATGCCTTCGAGAGGTATCGCCTTCTTGGCATGGAAATGgtaatggtct ... ttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCG
EST: CGCCTTCTTGGCATGGAAATG GGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCG
genomic: CGCCTTCTTGGCATGGAAATGgtaatggtct ... ttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCG
ttattagctgagaattgcaatgggaaagtaggctaatatggaatcttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCGGGAGAGTACTACATAAAGTCGATGATAGAAGCCGATCGAGTGGCTTCTC
ggctaat putative branch site (score: 3)
taatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggtctcttccttgttttcaagttttattagctgagaattgcaatgggaaagtaggctaatatggaatcttgtaaacagGGATTCAGATACGTAGCATCAGGACCAATGGTGAGGTCGTCGTACAAAGCGGGAGAGTACTACATAAAGTCGATGATAGAAGCCGATCGAGTGGCTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC