1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAAATGTCCCAATCTCGGTGAGTGCTGGTCTGGTGGTGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcatctaccgaatttgcccagcttgattctctcttttctctgaaagggcttctattttag
species | Arabidopsis thaliana |
transcript | AT2G20860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCCTTGGGGATACATGTACACGCGGCTGCAG GTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGAEST: gi|116471555|gb|EG514147.1|EG514147
genomic: GATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcat ... tctattttagGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGA
EST: GCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTACAG GTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGAEST: gi|125248267|gb|EL262352.1|EL262352
genomic: GCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcat ... tctattttagGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGA
EST: ATGATCCTTGGGGATACATGTACACGCGGCTGCAG GTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGAEST: gi|116472161|gb|EG514753.1|EG514753
genomic: ATGATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcat ... tctattttagGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGA
EST: GCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTACAG GTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGA
genomic: GCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcat ... tctattttagGTTTTGTAATGTGAAGACATCGCGTACACCTCCACCGCCTGATCCAAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAATGTCCCAATCTCGGTGAGTGCTGGTCTGGTGGTGAAACTGGAACCGCCACCGCTACGATTATGATCCTTGGGGATACATGTACACGCGGCTGCAGgtatcatcatctaccgaatttgcccagcttgattctctcttttctctgaaagggcttctattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG