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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgtagcttaattactccatcatcatgtttctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G17890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 4
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgtagcttaattactccatcatcatgttt-ctgaatgtgtatagttggttttattcacaagtat-tgttttttactaa--tcatcttctcaaacag--------
|||||  || | |||| | || ||||| || || || ||||| || ||||| ||||||||||||||||  |||||||| ||||| ||||||||||||||||||  | |   |   |||   ||| | | |  ||| ||| |     |   | |  || | ||  || | | || ||   | || || | |   |         
TTATACTGAAAAAGACTCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGATATGAAACCAGAGgta--tgatcaagcacatttgcatatctgccaaatttgtgtgaactgagatctatactactagatgctatataatagattaatgtttttacctattcttgcag

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 6
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgta-gcttaattactccatcatcatgtttctgaat-gtgtatagttggttttattca--caagtattgttttttac-taatcatcttctcaaacag--------
|||||  || |||||||| || ||||| || || || ||||| || ||||| ||||||||||||||||  |||||||| ||||| || ||||||||||||||| | | ||  ||     ||| || |  |  | | ||||  | |  | | ||| |    |  |  | |   | |  || | || || | |   |         
TTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGgtatgatcaagcacatttgcat-atctgccaaatttgtgtgaaatgagatctatactactagatgctatacataatatattaatatttttacctattcttgcag

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G08180.1 (Glycine max), 5'ss of exon 5
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgta-gcttaattactccatcatcatgtttctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag
|||||  || | ||| || || ||||| || || |||||||| || ||||||||||||||||||||||  || ||||| ||||| || ||||||||||||||  | | || |   |   |||       |   |||    |   |  ||||| ||  |  ||||   ||||     || ||||  ||  |||
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtgtggtcaagtttgctggcatatctacgcaatatggagttgtgtaattttactc-tatatattaaatttt-----tcctctttgcatgcag

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 5
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgta-gcttaattactccatcat---catgtt-tctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag
|||||  || | ||| || || ||||| || || || ||||| || ||||||||||||||||||||||  || ||||| ||||| || ||||||||||||||| | | || | | | | |||    | |   | || || ||||||      | ||     || | ||  | ||| |                   
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtcaagttcgctagcatatctacgcaatatggatttgtatatgctactatacattaaaattttcctctttgcag-----------------

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 4
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgtagcttaa---ttact--ccatcatcatgtttctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag--
|||||| |||| ||| || ||    || || || || ||||| |||||||| ||||||||||||||||  ||| |||| ||||| || |||||||||||||||   | |   || ||  |   |||||   || ||  | |   | || |   |||| | | | |  || ||       ||  | || ||  |     
TTATAGTGAGAAAGATGCAGCAAAAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTCTGGTACACCGTGACATGAAACCAGAGgtataatgaagtttgctggcacacatcaaaattttggctttaatttgtagccattatgc-ctaatggtgcttcccttacatttttttatcgcatgtag