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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttagtaatacgtttacatgtgtgttactaaaattttagagtcttattactttttgagtaattaagctattgttgttgcttgtttccagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT

Basic information

species Arabidopsis thaliana
transcript AT2G17890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17890.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os07g22710.3 (Oryza sativa), 3'ss of exon 2
gtaactttagtaatacgtttacatgtgtgttactaaaattttagagtcttat-tactttttgagtaattaagctattgt------tgttgcttgtttccagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT
 | | | |   || |  ||||  | | | |||      ||| |   | | || ||  |    || || |   ||  | |      ||||      || |||||| ||||||||||||||||||| ||| || || || || ||| | |||||||| || ||||| |||||||| ||||| |  ||||||||||| || || 
ctgaatgttcaaagatttttatttat-tattaagttcgtttgaatatttgatgtatgtagaaagcaaattcactgatatcacatttgttctgctcttacagGAAAGATAGCCGTTATAGCGAGAAAGATGCTGCAGTAGTTGTGCGGCAAATGCTCAAGGTTGCTGCTGAGTGCCATTTGCATGGTTTGGTTCATCGGGAC

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G23870.1 (Glycine max), 3'ss of exon 5
-gtaactttagtaatacgtttacatgtgtgttactaaaattttagagtcttattactttttgagtaattaagcta---ttgttgttgcttgtttc---cagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT
   |||    || |    |||     | | |   ||    ||| |        |  |||||| |||    | |||   |  |  |   ||| ||    ||||||||| || |||||||  || |||||||| || ||||| || || || ||||| || ||||| ||||||||||||||||  |||||||| ||||| || 
cagaaccagggtcaatgatttttggttatatgtttatgtgtttggcagaaagctg-tttttgtgtaccagaactaatttcctcttcatttgctttaatcagGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGAC

upper sequence: AT2G17890.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA11G08180.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------gtaactttagtaat--acgtttacatgtgtgttactaaaattttagagtcttattactttttgagtaattaagctattgttgttgcttgttt-ccagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT
                                                                     ||  || | || ||  |  || | |    ||   |   |    || |   || ||  || |||       ||  || | |   | |   |||  ||||||||| || |||||||  || | ||| || || ||||| || || |||||||| || ||||||||||||||||||||||  || ||||| ||||| || 
gtaagttccaatttatcttttatcttgaatgtgattatttttatttccttgtttaagtggctcttcagtgtgtctatggtgatcaaatttcagaatcatgacccctgatgactaaaaattttttttttcttgtactgg-aacttactctgccttcacatttatcagGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagagtcttattactttttgagtaattaagctattgttgttgcttgtttccagGAAGGATAGCCGTTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGAT
                                            cttgtttcc  CT-rich tract
         ttattactttttgagt  TA-rich tract