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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcgccttcagtaatctgaattttagacattgtagctattgtgaggctgtctttaatattttaatatttccttcatttccagCTTATGAGTCTTAACCCACAACTCCGAAGCATGCTAGATATGAATCCTCAGTTGAGGGAAATGATGCAGAACCCTGATTTCCTTCGCCAGTTTAGCTCTC

Basic information

species Arabidopsis thaliana
transcript AT2G17190.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124717969|gb|EH809371.1|EH809371
EST:     TACATGAATCAG                         CTTATGAGTCTTAACCCACAACTCCGAAGCATGCTTGATATGAATCCTCAG
genomic: TACATGAATCAGgtagcgcctt ... tcatttccagCTTATGAGTCTTAACCCACAACTCCGAAGCATGCTAGATATGAATCCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtagctattgtgaggctgtctttaatattttaatatttccttcatttccagCTTATGAGTCTTAACCCACAACTCCGAAGCATGCTAGATATGAATCCTCAGTTGAGGGAAATGATGCAGAACCCTGATTTCCTTCGCCAGTTTAGCTCTC
                               ttttaat  putative branch site (score: 3)
                                     tatttccttcatttcc  CT-rich tract
                      tctttaatattttaat  TA-rich tract