1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggctgttgttgatatgattgtgttggatagtttccacgttttattgttttgcatcatgagcctcaatgtttcctttctctgtggaccattttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTCTCCTTCTGCTCCCGCTGCAAATGCTGGAAACCAAACCACTGCTCCTCA
species | Arabidopsis thaliana |
transcript | AT2G17190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTEST: gi|116457546|gb|EG500138.1|EG500138
genomic: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
EST: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTEST: gi|86070809|gb|DR366566.1|DR366566
genomic: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
EST: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTEST: gi|86070811|gb|DR366568.1|DR366568
genomic: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
EST: ATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCGTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTEST: gi|86070807|gb|DR366564.1|DR366564
genomic: ATTTACAAGGGACGTATCCTCAAAGACGATCAGACTC-TCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
EST: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTEST: gi|116480256|gb|EG522848.1|EG522848
genomic: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
EST: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATG GTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
genomic: GATTTACAAGGGACGTATCCTCAAAGACGATCAGACTCTCCTCAGCTATGgtaattttct ... ttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTT
gttttgcatcatgagcctcaatgtttcctttctctgtggaccattttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTCTCCTTCTGCTCCCGCTGCAAATGCTGGAAACCAAACCACTGCTCCTCA
ccatttt CT-rich tract
accattttatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctgttgttgatatgattgtgttggatagtttccacgttttattgttttgcatcatgagcctcaatgtttcctttctctgtggaccattttatatatagGTTTGCAGGCTGATCACACCGTTCATATGGTTCGAGGTTTTGTGCCTTCTTCTCCTTCTGCTCCCGCTGCAAATGCTGGAAACCAAACCACTGCTCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - tgttttg