Sequence
atgc intronic sequence ATGC exonic sequenceCAATGCGTGGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattttgatagatcacatttaacaaaatccccctttggttgtgaaacttgtttaaagaaacttattttttcttgtgtctttgtgtgggtgtgcgatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G03670.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G03670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 5'ss of exon 8
CAATGCGTGGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattttgatagatcacatttaacaaaatccccctttggttgtgaaacttgtttaaagaaacttattttttcttgtgtctttgtgtgggtgtgcgatgcag-
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CTATCCGTGGGGTGCTATTGCATGGTCCACCAGGGTGCTCAAAGACTACCCTTGCAAAGGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCATTAAGgtttgctgcgtaa-aaattgt-tctctctttttctcatttcatccttccaacatgcaaaaagaagcctgtgaat-cgcataatattttctga---tgtgatgctta
upper sequence: AT2G03670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 5'ss of exon 4
CAATGCGTGGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattttgatagatcacatttaacaaaatccccctttggttgtgaaacttgtttaaagaaacttattttttcttgtgtctttgtgtgggtgtgcgatgcag-
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CTATCCGTGGGGTGCTATTGCATGGTCCACCAGGGTGCTCAAAGACTACCCTTGCAAAGGCTGCTGCTCATGCTGCCCAAGCTTCTTTCTTTTCATTAAGgtttgctgcgtaa-aaattgt-tctctctttttctcatttcatccttccaacatgcaaaaagaagcctgtgaattgcataatattt-tctga---tgtgatgctta
upper sequence: AT2G03670.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G13160.1 (Glycine max), 5'ss of exon 9
CAATGCGTGGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattttgatagatcacatttaacaaaatccccctt-tggttgtgaaacttgtttaaagaaacttattttttcttgtgtctttgtgtgggtgtgcgatgcag
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CTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACATGCTGCTCAAGCATCTTTCTTTTCCTTAAGgt------tttaatatattttatgttttaaagtaagttttatctttgttgcatgggaaaaaataagccttggcattataggactgaagtttatgtatggcttacatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86082970|gb|DR378729.1|DR378729EST: CTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAG CTGTGCGGAGCTATTTTCTATGTATGTTGGAGAAGGTGAAGCATTATTGCG
genomic: CTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattt ... tgcgatgcagCTGTGCGGAGCTATTTTCTATGTATGTTGGAGAAGGTGAAGCATTATTGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGCGTGGGATACTTCTACATGGTCCTCCAGGTTGCTCAAAGACAACTCTTGCTAAAGCCGCTGCAAATGCTGCTCAAGCCTCCTTCTTTTCCTTAAGgtatagattttgatagatcacatttaacaaaatccccctttggttgtgaaacttgtttaaagaaacttattttttcttgtgtctttgtgtgggtgtgcgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT