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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatactttttaaaaatattcattttgcactttgttgtcctgttttctccattgcgattaatggtttttttttccttgtgacagAAAAAGCTCCAGCAAGCTGTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGTGGGATACTTCTACATGGTCCTC

Basic information

species Arabidopsis thaliana
transcript AT2G03670.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03670.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 3
gtcaatactttttaaaaatattcattttgcactttgttgtcctgttttctccattgcgattaatggtttttttttccttgtgacagAAAAAGCTCCAGCAAGCTGTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGTGGGATACTTCTACATGGTCCTC
              ||||||| | |    || |||    |    ||      |   |  ||||||||| || || |  ||   |||||||| || |||||||||||||||||||| ||||| ||| | ||| ||||||  | | | || ||||| || || |||||| | ||  | |||||||| |
------------gtaaaatatgcct----cattttaggatttctttaatcaaacctcctttaatggttattgttgctatgcttcagAAAAAACTTCAGCAAGCTGTTGAATGGCCCATCAAGCATGCTGCTTCATTTGATAGACTTGGAATATCACCTATCCGTGGGGTGCTATTGCATGGTCCAC

upper sequence: AT2G03670.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA02G13160.1 (Glycine max), 3'ss of exon 8
gtcaatactttttaaaaatattcattttgcactttgttgtcctgttttctccattgcgattaatggtttttttttccttgtgacagAAAAAGCTCCAGCAAGCTGTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGTGGGATACTTCTACATGGTCCTC
        || |||||        ||||||| ||  ||      || |    ||    | | ||   | |  ||  | |   |||||||||  |||||||||||||||||||||| ||||| ||||| |||||||||  || |||||| ||||| ||  | ||||| || ||||| ||||| ||||
------gtttgttaaa--------ttttgcatttgatt---tgattctgagaatcttcagtgatacctgtgcttgtccttgaacagAAAAAAGTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGCTGCATTTTCAAGAATGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgttgtcctgttttctccattgcgattaatggtttttttttccttgtgacagAAAAAGCTCCAGCAAGCTGTTGAATGGCCAATCAAACATTCAGCTGCATTTGTAAAAATGGGCATATCGCCAATGCGTGGGATACTTCTACATGGTCCTC
                          gattaat  putative branch site (score: 3)
                                   tttttttttccttgt  putative PPT
                           attaatggtttttttt  TA-rich tract