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...gactagattctcttggtgctaaagctgagtaccattaaaaatgattatattcttgcatttgtgcttaattatgtctccttttatattgatcttatggcagGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAG
species | Arabidopsis thaliana |
transcript | AT2G02180.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAG GCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGEST: gi|125239537|gb|EL253622.1|EL253622
genomic: GTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGgtaaatctgt ... cttatggcagGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGG
EST: GTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAG GCTTTTCCTAATGTTGCAACGGTTTACCAGTAGAATCTAAAGGGCGG
genomic: GTGTTTCATTGTTCGCTGCCCTTGGATTTTTACTTTATGGTGGAAGgtaaatctgt ... cttatggcagGCTTTTCCTAATGTTGCAACGGTTT-CCAGTAGAATCTAAAGGGCGG
tatattcttgcatttgtgcttaattatgtctccttttatattgatcttatggcagGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAG
tattgat putative branch site (score: 3)
ttttatattgatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactagattctcttggtgctaaagctgagtaccattaaaaatgattatattcttgcatttgtgcttaattatgtctccttttatattgatcttatggcagGCTTTTCCTAATGTTGCAACGGTTTCCAGTAGAATCTAAAGGGCGGCGCAAAAAGCTGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - ctaaagc
- - - - - - - - - - - - - - - - -attaaaa