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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattgattgatttggctcatcttgtatctggtag

Basic information

species Arabidopsis thaliana
transcript AT2G02180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattgattgatttggctcatcttgtatctggtag----------------------------------------
 ||||| | ||| |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |||| || |   |      |||  |||| | | ||  |  | |||  || |   | |||  ||   |||||| || | |                                        
GTTCAATTAGTGCGAATACAATTGAGAGTGCCGGAATATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatctttcttttctttttttatttgtaatt--ttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcag

upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgtgttcatgttgattgattg-attgatttg--gctcatcttgtatctggtag----------------------------
 ||||| | ||  ||||||||| |||||| || || ||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |||| || |   |      |||  ||     | ||  | |    |  ||| |||  |||   | |   | | | | ||||                              
GTTCAATTAGTTCGAATACAATGGAGAGTGCCGGAGTATGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcag

upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G28990.1 (Glycine max), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttg---atttcgtgtgttcatgttgattgattgattgat-ttggctcatcttgtatctggtag------------------------------
 ||||||| |   | ||||| |||||||| || || || |||||||| ||||| |||||||||||||||||||||||  | || ||||| |||| || | | |      |||    |||||   | || |  ||  ||  ||  |   |  |   | || |    | | ||                                
GTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcgttcaaaccttttgctatttcactttttaaaattatttattttgtaattgcttattaatgtgacgttttgttaagagattatgcactctttttggttttgcag

upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttg---atttcgtgtgttcatgttgattgattgattgat-ttggctcatcttgtatctggtag------------------------------
 ||||||| |   | ||||| |||||||| || || || |||||||| ||||| |||||||||||||||||||||||  | || ||||| |||| || | | |      |||    ||||    | || |  ||  ||| ||  |   |  |   | || |      | ||                                
GTTCAACTGGCTCGGATACATTTGAGAGTGCCGGAGTACGGTTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTTTTGGTGAATGGGGgtttgtatcgttcaaaccttttgttattttactttttgaaattatttgtttagtaactgcttaataatgtgacgctttgttaagggattgtgcactctttttaattttgcag

upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgtt---gctgcggattttgatttcgtg-tgttcatgttgattgattgattgatttggctca--------tcttgtatctggtag
 ||||||| ||  | |||||||||||||| || || ||||||||||| ||||| ||||| || ||||||||||||||| | || ||||| |||| || |    | |    |||   | || ||| | |  ||  | ||   |||  |  |||   | |        || ||  |   | ||
GTTCAACTGGTTCGGATACAATTGAGAGTCCCAGAGTATGGTTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcag

upper sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ30530 (Selaginella moellendorffii), 5'ss of exon 2
ATTCAACTTGTGAGAATACAATTGAGAGTTCCTGAATATGGTTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttgctgcggattttgatttcgtgt-gttcatgttgattgattgattgatttggctcatcttgtatctggtag
|| |||||  |  | ||  |  |  | || || || ||||| ||||||||||| |||||||| || || || |||||| |||| ||||||||| ||  ||  | |   ||   |||| |  | | ||   | | ||| | |                             
ATACAACTCATCCGGATCGAGATTCGCGTCCCCGAGTATGGCTGGACGACGCAGAAGGTCTTCCATTTGCTGAATTTCCTTGTAAATGGAGgtgag-attcttccatcttagaattttggattgatctcttcgcttgctag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877197|gb|AU238028.1|AU238028
EST:     TTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAG                         TTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAG
genomic: TTGGACGACGCAAAAGGTCTTTCACTTTCTCAATTTCGTTGTTAATGGAGgttagtgttg ... tatctggtagTTCGTGCTGTGGTGTTTGTCTTCAGGCGAAATGTTCAGTTTATGCAACCAG