1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAATGGAGGAAATATGGACAGAAAGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGgtaattgataaagaaaaaaaactgactctcgcttaaaatatgaattggcataatacaaatttgatagacttattaatctgattttgatcctgtgtttgtttctattcag
species | Arabidopsis thaliana |
transcript | AT1G80840.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAG GTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGTEST: gi|116452376|gb|EG494968.1|EG494968
genomic: GAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGgtaattgata ... ttctattcagGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGT
EST: AAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAG GTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGTEST: gi|86075244|gb|DR371001.1|DR371001
genomic: AAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGgtaattgata ... ttctattcagGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGT
EST: GAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAG GTTCAGAGAAGTGTGGAGGATCAGTCCGTATTAGTTGCAACTTATGAGGGT
genomic: GAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGgtaattgata ... ttctattcagGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATGGAGGAAATATGGACAGAAAGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGCTTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGgtaattgataaagaaaaaaaactgactctcgcttaaaatatgaattggcataatacaaatttgatagacttattaatctgattttgatcctgtgtttgtttctattcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG