1 5' 3' | 2 5' 3' | 3 5' 3' |
TACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCATTAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttctctcagattcttcattctccacatgttcagaaattttcaattatcatggagctttttaatctagtatctcatcattatgtattatacactt...
species | Arabidopsis thaliana |
transcript | AT1G80840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGEST: gi|86019183|gb|DR314929.1|DR314929
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGEST: gi|124916549|gb|EH990423.1|EH990423
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTEST: gi|86019182|gb|DR314928.1|DR314928
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTT
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGEST: gi|86019185|gb|DR314931.1|DR314931
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGEST: gi|86019186|gb|DR314932.1|DR314932
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
EST: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCG ACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
genomic: TAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttct ... taaattgcagACAAGTGCTTTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCATTAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGgtacgcttctctcagattcttcattctccacatgttcagaaattttcaattatcatggagctttttaatctagtatctcatcattatgtattatacactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctcc