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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattagttccttaataggcttaaggaagtgaatcattatcaagagctaatctcatctcatactgtttaaacattgtccttcatatatagGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGACATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGA

Basic information

species Arabidopsis thaliana
transcript AT1G79270.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164113942|gb|ES099782.1|ES099782
EST:     CCTGTAACCAATAGCAGAGACACACAAGAG                         GTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAG
genomic: CCTGTAACCAATAGCAGAGACACACAAGAGgtaacattag ... tcatatatagGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatcaagagctaatctcatctcatactgtttaaacattgtccttcatatatagGTGAGGTTGCCTCAAGGGAATGAAGTGTTGAACATCTTTAAGAACTACGCAGCTAAGACATCTATTTTAGATGATTTTGATTTTTATGAAAACAGAGAGA
         agctaat  putative branch site (score: 3)
                                      ttgtccttc  putative PPT
                              tttaaacatt  TA-rich tract