1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaacatttacactctttaattcttctctctttcacattacctgaagaggtttgactcatctttttttctttgtattgatgctatagGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTAA
species | Arabidopsis thaliana |
transcript | AT1G79270.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACACCGCGAAAA GCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGTEST: gi|86037783|gb|DR333538.1|DR333538
genomic: AACACCGCGAAAAgtaacattta ... gatgctatagGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGT
EST: AACACCGCGAAAA GCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGT
genomic: AACACCGCGAAAAgtaacattta ... gatgctatagGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGT
tcacattacctgaagaggtttgactcatctttttttctttgtattgatgctatagGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTAA
tattgat putative branch site (score: 3)
tttttttctttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatttacactctttaattcttctctctttcacattacctgaagaggtttgactcatctttttttctttgtattgatgctatagGCATCACAGAACAGCTATGCCCCACCCCCACTGCTTAACCAAGAAAAAGGTCGCATTGCTTACCCGATGGACCCAGTAAAGAAAAAGTCTGGAGCTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT