Sequence
atgc intronic sequence ATGC exonic sequencegtatcaaacaatcttcttcctccaaaatttgtcatatgtattcactcttataaaagtaattagtgagtcctaattttaattaatggaattaacgcagCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATGGGCAAGAGACTTGAGAAGCATGTAGGAGATAATGGGAAACTCGTTATCA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G78210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116425269|gb|EG467861.1|EG467861EST: AAGCCATACCAAAAGACAGAATAATTTCAGAGATTCCAAAGCTCAAACAG CCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATG
genomic: AAGCCATACCAAAAGACAGAATAATCTCAGAGATTCCAAAGCTCAAACAGgtatcaaaca ... attaacgcagCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATG
EST:
gi|116425268|gb|EG467860.1|EG467860EST: AAGCCATACCAAAAGACAGAATAATCTCAGAGATTCCAAAGCTCAAACAG CCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATG
genomic: AAGCCATACCAAAAGACAGAATAATCTCAGAGATTCCAAAGCTCAAACAGgtatcaaaca ... attaacgcagCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATG
EST:
gi|164174056|gb|ES168578.1|ES168578EST: AAGCCATACCAAAAGACAGAATAATCTCAGAGATTCCAAAGCTCAAACAG CCAACATTGATAATA
genomic: AAGCCATACCAAAAGACAGAATAATCTCAGAGATTCCAAAGCTCAAACAGgtatcaaaca ... attaacgcagCCAACATTGATAATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactcttataaaagtaattagtgagtcctaattttaattaatggaattaacgcagCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATGGGCAAGAGACTTGAGAAGCATGTAGGAGATAATGGGAAACTCGTTATCA
aattaac putative branch site (score: 2)
taattttaattaatgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcaaacaatcttcttcctccaaaatttgtcatatgtattcactcttataaaagtaattagtgagtcctaattttaattaatggaattaacgcagCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGGAGATGGGCAAGAGACTTGAGAAGCATGTAGGAGATAATGGGAAACTCGTTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT