1 5' 3' | 2 5' 3' |
GTCTGTGAAAAAGCTCCGGGAACTTATGGGTTACATATTTTACAAACCGGCGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctactttcttctttttttacttcttcaaccaaatcatattacgacacgtgtctacatgtcttaagaacatatactatacgaaaaagtgatttaaa...
species | Arabidopsis thaliana |
transcript | AT1G78210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACAT GCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACEST: gi|116425269|gb|EG467861.1|EG467861
genomic: CGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctact ... aactacacagGCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAAC
EST: CGTTGGCAAGACTGGTTCCTACTTGTTTTCTCCATGATTTCATCGAACAT GCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATCAAAGCCATAEST: gi|164082608|gb|ES011987.1|ES011987
genomic: CGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctact ... aactacacagGCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATCAAAGCCATA
EST: GGTTCCTACTTGTCTTCTCCATGATTTCATCGAACAT GCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATTAAAGCCATAEST: gi|116425268|gb|EG467860.1|EG467860
genomic: GGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctact ... aactacacagGCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATCAAAGCCATA
EST: CGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACAT GCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATCAAAGCCATA
genomic: CGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctact ... aactacacagGCTTTGACAAGAGATAATATGGAAGAGAAGAGAGAACTGATCAAAGCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGTGAAAAAGCTCCGGGAACTTATGGGTTACATATTTTACAAACCGGCGTTGGCAAGACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATgtgagctactttcttctttttttacttcttcaaccaaatcatattacgacacgtgtctacatgtcttaagaacatatactatacgaaaaagtgatttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgaaaaag