1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatttattttaactttgctttagttaaaagttaaaaggattctttactatgtaattaaaatcctgatcggtgtattgatgaaataaacagGAGGAGGTAAGAAGGTAACGAGGGTTGAGGTGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGAACAAGTACGG
species | Arabidopsis thaliana |
transcript | AT1G77760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCATTCACTACTCAGAAGCCGTACACATTAAAAGGCTACGCTTATTCTG GAGGAGGTAAG
genomic: TGCATTCACTACTCAGAAGCCGTACACATTAAAAGGCTACGCTTATTCTGgtaatttatt ... aaataaacagGAGGAGGTAAG
aggattctttactatgtaattaaaatcctgatcggtgtattgatgaaataaacagGAGGAGGTAAGAAGGTAACGAGGGTTGAGGTGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGAACAAGTACGG
tattgat putative branch site (score: 3)
tctttactatgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttattttaactttgctttagttaaaagttaaaaggattctttactatgtaattaaaatcctgatcggtgtattgatgaaataaacagGAGGAGGTAAGAAGGTAACGAGGGTTGAGGTGACTCTAGACGGAGGAGACACGTGGAGTGTTTGTGAGCTTGACCACCAGGAGAAACCGAACAAGTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA