1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTAGACTCTATTACCAATTCGAGCTAGAGCCGCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGgtaaggcaaaacctctcttctagtcagagatttaaagacagagcaaacaccttttgtttggtttgtacacatagttaattgctctgcttatgtttgattctatag
species | Arabidopsis thaliana |
transcript | AT1G77090.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACG GTCT-CAATGGAAGAGACACEST: gi|86075038|gb|DR370795.1|DR370795
genomic: TGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGgtaaggcaaa ... gattctatagGTCTTCAATGGAAGAGACAC
EST: TGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACG GTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCATEST: gi|19741987|gb|AU227340.1|AU227340
genomic: TGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGgtaaggcaaa ... gattctatagGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT
EST: TGCAACAGCTGCCGGAAACCGCCTTTACTTATTCAGTGTCACCGGAAACG GTCTTCAATGGAAGAGACAGTACAAGGATCTGAAGAGGATAGCTAGTTCAT
genomic: TGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGgtaaggcaaa ... gattctatagGTCTTCAATGGAAGAGACACTACAAGGATCTGAAGAGGATAGCTAGTTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGACTCTATTACCAATTCGAGCTAGAGCCGCCTCATGTACTGATAACTGCAACAGCTGCCGGAAACCGCCTTTACTTGTTCAGTGTCACCGGAAACGgtaaggcaaaacctctcttctagtcagagatttaaagacagagcaaacaccttttgtttggtttgtacacatagttaattgctctgcttatgtttgattctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC