Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgttttgtcccttggctcttgtttcttcgtttctatggtttttagtcatactttgagattcttttcattgttgtatcaaatttag

Basic information

species Arabidopsis thaliana
transcript AT1G77090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os12g08830.2 (Oryza sativa), 5'ss of exon 2
GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgttttgtcccttggctcttgtttc---ttcgtttctatggtttttagtcata--ctttgagattcttt-tcattgttgtatcaaatttag-------
||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || || || || |||  |||    |||| | | |  ||| | |||||      |    |||  |||  |   |||   | ||| |      |||| |  ||||  ||| |    |   || |||  ||| |||         
GAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGAGTTGGATGGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaactgaagctactgtcacaaattcagatttatagaacactgtcacaatctttccgatgcaaaattgatgctgttccaatttttcaatgtag

upper sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G42010.1 (Glycine max), 5'ss of exon 2
GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgttttgtcccttggctcttgtttcttcgtttct----atggtttttagtcatactttgagattcttttcattgttgtatcaaatttag------------
||| || || || || || || |||||||||||||| ||||||||||| |||||||||||||| || |||  |||    || ||| |||| ||| | |||||  ||     ||     |  |  ||    |      |  |||||||   ||||  ||  |     |       |   ||  ||||              
GAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGAAGAGgtgatgcttaatgatctcttctagttaaagttggaaaaaagtttttaagtatacagtggaaaagactaatgaaataactcctatttgtctcgttttgggt

upper sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G12760.1 (Glycine max), 5'ss of exon 2
GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgttttgtcccttgg-ctcttgtttcttcgtttct---atggtttttagtcatact-ttgagattcttttcattgttgtatcaaatttag-----------
||| || || || || || || |||||||| ||||| ||||||||||| |||||||||||||| || |||  |||    || ||  |||| ||| | |||||  ||     ||  ||||| |   |    ||     | |  |||||   ||||  | || |            |     | | ||  |           
GAGGACGTATCGCAGGCCGGATGAGAAGTCTGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGAAGAGgtgatgcttaatgatctcttatagttaaagttggaaaaagtgttttaagtatacagtggaaaagaccaatgaaataactcctatttctgtcgttttgggt

upper sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 2
GAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAATGAGgt-----tttgtccc---ttggctcttgtttcttcgtttctatggttt----ttagtcatactttgagattcttttc----attgttgtatcaaatttag-------------------
||| |||||||| ||||| || || || || ||||| ||||||||||| |||||||| ||||| ||||||  |||||| || |||   | |||| | |||||     | |  | |   | | || | |  ||  |   | ||| | ||    ||   | | | | || ||     ||    |   ||  | |||||                       
GAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGAAGAGgtaataatctacctccactggactatagactcgacccctatattgattcattttcccccttcctggacatctacctctaccacaatttcaccaaataagcttcttgatccatgtcacag