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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgtttaccccatatgtccacagctcttaagtcttacctctttaatggattagatgataagtcttaaacaaatgttctttgcagATACTTGGAGCAGAGAGTGGATGGAAACCGATTCCTCTCACTGATCTTGTCTCAAGCGCTTCTGTGAGAAAAGCCTACCGCAAGGCAACTCTTTATGTTC

Basic information

species Arabidopsis thaliana
transcript AT1G75310.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124709639|gb|EH801041.1|EH801041
EST:     AGTGGAAAGGAAAACAACTTACGGGCGTTGATCTCAACACTCCAATAT                         ATACTTGGAGCAGAGAGTGGATGGAAACCGATTCCTCTCACTGATCTTG
genomic: AGTGGAAAGGAAAACAACTTACGGGCGTTGATCTCAACACTCCAATATgtaatttgtt ... ttctttgcagATACTTGGAGCAGAGAGTGGATGGAAACCGATTCCTCTCACTGATCTTG
EST: gi|164216983|gb|ES029567.1|ES029567
EST:     CAACTTACGGGCGTTGATCTCAACACTCCAATAT                         ATACTTGGAGCAGAGAGTGGATGGAAACC
genomic: CAACTTACGGGCGTTGATCTCAACACTCCAATATgtaatttgtt ... ttctttgcagATACTTGGAGCAGAGAGTGGATGGAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttacctctttaatggattagatgataagtcttaaacaaatgttctttgcagATACTTGGAGCAGAGAGTGGATGGAAACCGATTCCTCTCACTGATCTTGTCTCAAGCGCTTCTGTGAGAAAAGCCTACCGCAAGGCAACTCTTTATGTTC
                                           tgttcttt  CT-rich tract
                                  ttaaacaaat  TA-rich tract