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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAGgtctgtgatcttgtaaaagacactctatgatttatctgttgtagtgtaatatttatttttgtcttttcctactgacgctattaggagtaaaaaacccttg...

Basic information

species Arabidopsis thaliana
transcript AT1G73960.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73960.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA05G07920.1 (Glycine max), 5'ss of exon 20
TACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAGgtctgtgatc---ttgtaaaagacactctatgatttatctgttgtagtgtaatatttatttttgtcttttcctactgacgctattaggagtaaaaaacccttg--
||||||||||||| ||||||  | || |||||||| ||||||||||||| | | || ||||||||||| || || || ||  | || |||||   |   |   || |       | |||    || | || || | |  |||||| |    |  |||   | | ||||  |||||  |  | | |    |     
TACAATGACAACAATGGGAACCCTTACTCTGATGTCTTCTGGCTTGCTGCGTTGGTCCAGTCAGTTGGCGAGCTTGAGTTTGGACAACAGgttcatagactatttctttggctgattctcatgttcacct-ttatggattaatatgt----tgatctgagcttgctgagtctattttgttttatatttaccaagt

upper sequence: AT1G73960.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA17G13080.1 (Glycine max), 5'ss of exon 20
TACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAGgtctgtga-----tcttgtaaaagacactctatgatttatctgttgtagtgtaatatttatttttgtcttttcctactgacgctattaggagtaaaaaacccttg--
||||||||||||| ||||||  | || || |||||||||||||||||||   | || |||||||||||||| || || ||  | || |||||   |       || | |    ||  ||| ||| |  | || || | |  ||||||      |  |||   | | |||   |||||  |  | | |    |     
TACAATGACAACAATGGGAACCCTTACTCAGATGTATTCTGGCTTGCTGCATTAGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAGgttcatagactattccttttgctgattctc-atggtc-acct-ttatggattaatatgc----tgatctgagcttgctgggtctattttgttttacatttaccaagt

upper sequence: AT1G73960.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 20
TACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAGgtctg------tgatcttgtaaaagacactctatgatttatctgttgtagtgtaatatttatttt-tgtcttttcctactgacgctattaggagtaaaaaacccttg
|| || || || | ||||||| | || ||||||||||||||||||||||  || || ||||||||||| || || |||||  | || ||||| ||      | ||||     | |    | ||||| | |  || |  | |||  |  |||||   ||    || ||    |   |||||   |   |         
TATAACGATAATAATGGGAATCCTTACTCTGATGTATTCTGGCTTGCTGCACTAGTGCAGTCAGTTGGGGAACTTGAATTTGGGCAACAGgtatgaaaatattatctgtctcatggatttttatgact-acatgctccaatgtcttgcttattgggtgatgatttctctcaat--tattacttgctcatttgt----

upper sequence: AT1G73960.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: PP1S185_43V6.1 (Physcomitrella patens), 5'ss of exon 22
TACAATGACAACAGTGGGAATTCGTATTCTGATGTATTCTGGCTTGCTGTGCTTGTTCAGTCAGTTGGTGATCTCGAATTCTGTCAGCAGgtctgtgatcttgtaaaagacactctatgatttatctgttgtagtgtaatatttatttttgtcttttcctactgacgctattaggagtaaaaaacccttg-----
 | ||||||||||| |||||| | |||||||||||||||||||| ||     |  || | ||  | |||   || || ||| |  |||||||  |   | ||       |  |||| | || ||  | | ||  | | | |  || | | ||| |||    |||  || |||   | |  |     |||      
CATAATGACAACAGCGGGAATGCATATTCTGATGTATTCTGGCTAGCGTCTGTCATTGAATCCATAGGTTCACTGGAGTTCGGGAAGCAGgt--gcagttttactctctatgctctct-atatacttttagttctctgaaagatagtct-gtcatttttgtctggtgc-attgtaattgcagtgtacttttcgta