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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATATCTGACCTTAAGAAGCAACTAGAGGAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAGgtacaaacagattttcaagactagcctaacaaaatgtaacattcttctaatcttgcgttcttattctggttag

Basic information

species Arabidopsis thaliana
transcript AT1G72330.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72330.3 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv09s0002g00340.t01 (Vitis vinifera), 5'ss of exon 9
GGAAATATCTGACCTTAAGAAGCAACTAGAGGAAGCTAGGTCCAAGGGCATCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAGgta-----caaacag-attttcaagactagcctaacaaaatgta-------acattcttctaatcttgcgttcttattctggttag------------------------------------------------------
||| || || || ||| |||||||| | || || || | ||| ||||| ||| | || |||||||||||||| ||||| || || |||||||| |||||||||      || |||   ||| |   ||||  |  ||||  | |       | ||| |  | |    | | |  |    ||   ||                                                      
GGAGATTTCAGAACTTCAGAAGCAATTGGAAGATGCAAAGTCAAAGGGTATCACCGTTAGGGCCTTGGTTGTAATAAATCCAGGCAACCCAACGGGGCAGgtaagcaataatcagtgctttgatagctaggtttgcaaagagcatgtgtttaaattttcttcaaacagggcttcttggatgagaagatggtttacttctgaccttctatggttgaattttcttgggttttcatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054017|gb|DR349774.1|DR349774
EST:     TCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAG                         GTTCTTGCGGA
genomic: TCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAGgtacaaacag ... ttctggttagGTTCTTGCGGA
EST: gi|86054013|gb|DR349770.1|DR349770
EST:     TCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAG                         GTTCTTGCGGAANNAA-CCAGCGTGACATTGTTA-TTTCTGCAAGCAAGAG
genomic: TCTCTGTAAGGGCCTTGGTTGTCATAAACCCCGGTAACCCAACTGGGCAGgtacaaacag ... ttctggttagGTTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAG